Integrating automated metadata handling into the laboratory workflow.
Jan Grewe (Ludwig-Maximilians-Universität München), Adrian Stoewer (Ludwig-Maximilians-Universität München), Andrey Sobolev (Ludwig-Maximilians-Universität München), Hagen Fritsch (Ludwig-Maximilians-Universität München), Thomas Wachtler (Ludwig-Maximilians-Universität München), Jan Benda (Ludwig-Maximilians-Universität München)
Here we show how metadata handling can be included into the researcher's workflow using odML (open metadata markup language, www.g-node.org/odml). The odML is a rather simple and flexible hierarchical format of extended key-value pairs, enabling to enter any metadata necessary. Interoperability can be achieved by using specified terminologies (see www.g-node.org/odml/terminologies). We present the odML API and tool suite for data annotation supporting the odML format and terminologies. Furthermore we exemplify how data annotation can be incorporated into the neurophysiologists tool chain. Beginning at the time of recording the tool for data recording (relacs; www.relacs.net) writes the metadata it knows to a file along with the recorded data. This comprises for example information about stimulus settings, hardware configurations etc. During data analysis (e.g. using Matlab) further information about the analyses performed, or characteristics of the recorded cell that is extracted from the responses is added. Finally, the data is stored and needs to be kept available. Our data management/data sharing tools (LabLog, http://lablog.sourceforge.net; G-Node portal, www.portal.g-node.org) help to keep track of the recorded data.
This way the whole workflow can be traced from the final results back to the raw data. All information of both the original data and the analysis tools are kept together with the results thus increasing reproducibility. Eventually this will allow us to share data with other scientists in a very convenient way.
Supported by the German Federal Ministry of Education and Research (BMBF grants 01GQ0801 and 01GQ0802)